Light Microscopy Facility

Light Microscopy Facility

Welcome

Welcome to the ICR Light Microscopy Facility. We are a Core Research Facility supporting discovery and translational cancer research across The Institute of Cancer Research, giving researchers, students and clinicians access to advanced imaging — and, just as importantly, to the people who can help you get the most out of it.

From Monday 20 July 2026, our two sites — Chelsea and Sutton — come together as one combined booking core, run by a single team led by the Head of Light Microscopy.

One team, two sites — please book on the correct site. Every instrument and category is labelled by site (Chelsea or Sutton), and each calendar carries a site banner. When you book, check the banner and choose the instrument at the site you need.

Whether you are imaging a single coverslip for the first time or planning a large multiplex spatial-biology study, we are here to help — from experimental design and acquisition through to image analysis. The best time to talk to us is before you start: a short conversation up front usually saves a great deal of time later.

Light microscopy at the ICR — what we enable

Our imaging underpins ICR science across cancer cell biology, the tumour microenvironment, drug response, genome stability, and translational imaging of patient samples. We provide access, training and expert support across the full range of light microscopy, including:

  • Confocal imaging — point-scanning and spinning-disc, for fixed and live samples
  • Super-resolution — Airyscan, single-molecule localisation (dSTORM, DNA-PAINT) and SoRa/TIRF
  • Light-sheet microscopy — for live specimens, large samples and cleared tissue
  • High-content and live-cell imaging — automated, plate-based screening and in-incubator time-lapse
  • Spatial biology and multiplex imaging — ultrahigh-plex tissue phenotyping
  • Whole-slide and slide scanning — high-throughput brightfield and fluorescence
  • Image analysis and computation — a broad suite of licensed and open-source tools, plus help building bespoke pipelines

We support you across three connected strands: imaging, image analysis and computation, and experimental design, training and consultation.

Our team

The facility is led by the Head of Light Microscopy, working alongside site teams at Chelsea and Sutton.

Head of Light Microscopy

Kai Betteridge, PhD, FRMSHead of Light Microscopy (leads both sites)

Advanced fluorescence microscopy (confocal, spinning-disc, light-sheet, TIRF, SIM), two-photon and in-vivo imaging, and computational image analysis (ImageJ/FIJI macros, Python). Leads ICR microscopy and image-analysis training, and supports group leaders with grant applications and equipment procurement. Chair of the Scientific Services Managers Forum and a member of the Research Infrastructure Committee.

Contact: [kai.betteridge@icr.ac.uk]

 

Chelsea team - LightMicroscopyChelsea@icr.ac.uk

Queenie Lai, PhDSenior Microscopist & Image Analyst, Chelsea

Confocal (point-scanning and spinning-disc), light-sheet (Lattice, Marianas diSPIM) and high-content robotic screening, plus advanced techniques including FRAP, FRET and ratiometric imaging. Image analysis in Imaris (3D visualisation and cell tracking), CellProfiler and Cellpose, with ImageJ/FIJI macro development.

Ross Scrimgeour, PhDSenior Microscopist & Image Analyst, Chelsea (image informatics / super-resolution)

Super-resolution and single-molecule localisation microscopy (dSTORM, DNA-PAINT), technical lead for cleared-tissue light-sheet imaging, and confocal/live-cell imaging. Image analysis with a focus on image informatics and machine-learning quantification (Python, Aivia, FIJI/ImageJ, Imaris, QuPath).

 

Sutton team - LightMicroscopySutton@icr.ac.uk

Louise Howell, FRMS - Facility Manager, Sutton 

Confocal and live-cell imaging specialist with more than 25 years' experience; quantitative imaging workflows, experimental design, training and facility strategy. Supports group leaders from the Sutton site with grant applications and equipment procurement. Fellow of the Royal Microscopical Society.

Emma WestlundSenior Microscopist & Image Analyst, Sutton (spatial biology / PhenoCycler-CODEX)

High-content imaging and multiplex spatial-biology imaging, including training and maintenance for the PhenoCycler-CODEX platform, plus slide scanning. Image-analysis specialist in QuPath, Python pipelines, CellProfiler, Cellpose and spatial/neighbourhood analysis; creator of the ICR QuPath training course.

How the facility is structured

The Light Microscopy Facility is led by the Head of Light Microscopy, who oversees two site teams — Chelsea and Sutton with a dedicated Facility Manager on the Sutton site. From 20 July 2026 both sites are served by one combined iLab booking core. You book the correct site-labelled instrument, and the same team supports you across both locations.

Correlative Light & Electron Microscopy (CLEM) is a separate facility, co-led by Kai Betteridge — it is not booked through this core. For CLEM enquiries, please contact CLEMworkflows@icr.ac.uk.

What we offer

Imaging capabilities

Our instrument portfolio spans routine and advanced imaging. Every system below is site-labelled — please book at the correct site.

Confocal — point-scanning

  • Leica SP8 point-scanning confocal (Chelsea)
  • Zeiss LSM 700 confocal (Sutton) — fixed samples and live-cell/time-course imaging
  • Zeiss LSM 980 with Airyscan 2 (Sutton) — super-resolution (~1.7× increase in spatial resolution compared with confocal, at faster speed); suitable for fixed and live-cell/time-course imaging, FRAP, and multi-position imaging with stitching of large areas, with environmental control

Confocal — spinning-disc / super-resolution (Chelsea)

  • Basic Spinning Disc Confocal (Chelsea)
  • Advanced Spinning Disc Confocal (Chelsea) — high-powered widefield source and high-QE camera; our most sensitive widefield system and ideal for time-lapse
  • Super-Resolution Spinning Disc — TIRF / STORM / SoRa (Chelsea) — also supports single-molecule localisation (dSTORM, DNA-PAINT)

Light-sheet (Chelsea)

  • Lattice Light Sheet (Chelsea)
  • Marianas Light Sheet / diSPIM (Chelsea)
  • Cleared-Tissue Light Sheet (CTLS) (Chelsea) — for cleared and large samples
  • Oblique Plane Microscope (OPM) (Chelsea) for high content dual view lightsheet imaging of spheroids and organoids.

High-content, screening and live-cell

  • Opera Phenix Plus high-content spinning-disc screening — Chelsea and Sutton (one system per site)
  • ImageXpress high-content spinning-disc, plate-based imaging (Chelsea)
  • Incucyte SX5 in-incubator live-cell time-lapse (Chelsea)
  • CytoSMART Lux3 FL benchtop / in-incubator live-cell fluorescence (Sutton)

Spatial biology / multiplex

  • Akoya PhenoCycler (CODEX) (Sutton) — ultrahigh-plex spatial phenotyping. This system sits at a separate location (CCDD) rather than in the main Sutton labs; access is training-gated, so please contact the Sutton team.

Slide scanning / whole-slide imaging (Sutton)

  • Evident VS200 slide scanner (Sutton)
  • Zeiss Axio Scan.Z1 — automated brightfield and fluorescence, 100-slide capacity (Sutton)
  • Nanozoomer-XR C12000 (Hamamatsu) — high-throughput brightfield and fluorescence, 320-slide capacity (Sutton)

Upright / widefield and specialist

  • Zeiss Axioskop 2 upright microscope with image capture (Sutton)
  • Zeiss/MetaSystems automated fluorescence and brightfield scanning (Axio Imager Z2) (Sutton)

Some legacy systems (for example the DeltaVision widefield microscope and the Celigo image cytometer) have been decommissioned and are no longer bookable. If you previously used one of these, get in touch and we will recommend the best current alternative — for sensitive widefield time-lapse we usually suggest the Advanced Spinning Disc; for plate-based widefield, the ImageXpress.

Image analysis and computational support

Imaging is only half the story — we put real weight behind analysis. The facility holds licences for a wide range of image-analysis packages and has deep experience across commercial and open-source tools, including:

  • Vendor / licensed: Zeiss Zen (including Zen Intellesis machine-learning segmentation), Harmony (Opera Phenix), MetaXpress (ImageXpress), Imaris (3D visualisation and tracking) and Aivia (machine-learning analysis)
  • Open-source: Fiji/ImageJ, QuPath, CellProfiler and Cellpose

Beyond the software, our team builds bespoke analysis pipelines — Python workflows, ImageJ/FIJI macros, machine-learning classifiers, 3D quantification, and spatial/neighbourhood analysis for multiplex data. If you are unsure how to approach the analysis for your experiment, ask us.

Plan your analysis before you acquire most of your data. It is far easier to build the right pipeline up front — please plan ahead and speak with the team.

Experimental design, training and consultation

  • Talk to us first. We are happy to advise on experimental design before you book, so your imaging answers the question you actually have.
  • Training and sign-off. Independent use requires appropriate training. New users book a "Training" slot on each instrument's calendar; training and assisted use require explicit core-admin approval, so please email your site team describing your experiment before
  • Structured courses. We run training in microscopy and image analysis, including introductory microscopy, ImageJ/FIJI and QuPath.
  • User Group. The User Group meets the Head of the facility roughly every four months and channels user feedback, via the Research Infrastructure Committee, into facility improvements. To pass on a suggestion or to be put in touch with a User Group representative, contact your site team.

Our sites

Chelsea — Chester Beatty Laboratories (CBL)

  • Address: Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB
  • Open: 24/7 · Staffed: Monday–Friday, 09:00–17:00
  • Site team: Queenie Lai and Ross Scrimgeour
  • Site email: [LightMicroscopyChelsea@icr.ac.uk]

Sutton — Brookes Lawley Building (BLB)

  • Address: Brookes Lawley Building, 15 Cotswold Road, Sutton SM2 5NG
  • Open: 24/7 · Staffed: Monday–Friday, 09:30–17:30
  • Site team: Louise Howell and Emma Westlund
  • Site email: [LightMicroscopySutton@icr.ac.uk]

[Please confirm the canonical public room list for each site — Kai to confirm]

Support beyond the instruments

The facility is more than a set of microscopes. We can help you:

  • Design your experiment — choosing the right instrument, sample preparation and controls before you image
  • Build your analysis — from ready-made tools to bespoke, scripted pipelines
  • Strengthen grant and equipment applications — advice on imaging methods, feasibility and capability statements

For analysis queries, experimental-design advice or support with grant applications, contact Kai Betteridge([kai.betteridge@icr.ac.uk]) or your site team.

Data storage and looking after your data

Please read this before you image — storage is the user's responsibility.

  • Each team's instruments are mapped to a single folder in that team's RDS. Do not leave data on the computers that operate the instruments.
  • Data on an instrument is deleted after around 30 days. You can move data to the RDS for permanent storage directly from the instrument.
  • You may only use the instruments if you have adequate storage — on the ICR's RDS, or your own server/NAS that can be mapped directly to the instrument or its analysis computer. For the high-content microscopes and light sheets, this storage must be in place before you use the instrument.
  • The Opera Phenix and ImageXpress high-content systems store data directly on the instrument. Anything over 30 days old is deleted without warning, and this data is not backed upback it up immediately after your experiment to avoid losing it.
  • The facility will not, and cannot, be held responsible for storing research data. Backing up and storing data acquired in the facility is solely the user's responsibility.

Instrument etiquette

  • Switch systems off properly directly after use — please don't leave anything on.
  • Do not switch off the analysis computers. We use them to work remotely and they hold a number of site licences, so they must stay on for users to access some of our software remotely.

Time-lapse imaging

Time-lapse bookings are charged with the first 5 hours at the full rate, and a discounted rate thereafter within each 24-hour period. Bookings can be made for a maximum of 24 hours on all systems except the PhenoCycler.

Where possible, please run time-lapse experiments out of hours — evenings and weekends — so that daytime slots stay free for other users.

Acknowledging the facility

If our support contributes to your work, please acknowledge the facility in your publications. Please use the wording for the site you worked with:

Chelsea:

We acknowledge the Chelsea Light Microscopy facility at The Institute of Cancer Research for providing expert support on microscopy and image analysis. Their support was instrumental in achieving the results presented in this paper. https://doi.org/10.5281/zenodo.14851951

Sutton:

We acknowledge the Sutton Light Microscopy facility at The Institute of Cancer Research for providing expert support on microscopy and image analysis. Their support was instrumental in achieving the results presented in this paper. https://doi.org/10.5281/zenodo.14708240

Resources for microscopy and image analysis

Some useful external resources:

Software & remote access

The facility holds licences for a wide range of image-analysis software — including Fiji/ImageJ, QuPath, Imaris, Aivia, Zeiss Zen, Harmony and various vendor packages — and the team has broad experience across many programs. The analysis computers carry these site licences and can be accessed remotely (which is why they must stay on).

Two things worth remembering:

  • Plan your analysis before you acquire most of your data. It is far easier to build your analysis pipeline first — please plan ahead and speak with the team.
  • Ask us. If you're unsure about any aspect of image acquisition or analysis, get in touch — advice is part of the service.

Contact us

Contacts

Name Role Phone Email Location
Kai Betteridge
Head of Light Microscopy
 
07825415768
 
kai.betteridge@icr.ac.uk
 
CBL -1N12.1
 
Louise Howell
Sutton Light Microscopy Facility Manager
 
0203 4376442 or 203 4376845
 
LightMicroscopySutton@icr.ac.uk
 
0E17.1/0E10.1/0E12.2
 
Emma Westlund
Sr Microscopist & Image Analyst
 

 
LightMicroscopySutton@icr.ac.uk
 
0E17.1/0E10.1/0E12.2
 
Queenie Lai
Sr Microscopist & Image Analyst
 

 
LightMicroscopyChelsea@icr.ac.uk
 
CBL -1N12.1
 
Ross Scrimgeour
Sr Microscopist & Image Analyst
 

 
LightMicroscopyChelsea@icr.ac.uk
 
CBL -1N12.1